Updated Microbiology module

February 8th, 2010

GIDEON’s redesigned Microbiology module has been launched (screenshot). Following the update of the GIDEON Diagnosis module, we’ve implemented many of the new features in Microbiology, including

  • New tabs
  • Suggestions
  • Dynamic identification
  • Usability improvements

New tabs

The new tabs in Microbiology replace the older radio buttons and make it easier to reach each function. For each category: Bacteria, Mycobacteria and Yeasts there is easy access to Identify or Lists.

Suggestions

GIDEON’s Microbiology Compare function, until now, has ranked phenotypic tests which are most likely to impact the Identification list. Now, the top four tests which are most likely to focus and shorten the list of possible organisms are displayed and dynamically updated as each new test result is entered. Clickable boxes which allow the user to enter a “yes”, “no” or “unknown”, appear and enlarge each time the mouse passes near a test.

Dynamic identification

The Identify button has been eliminated! Now, the Identification list is automatically updated as test results are entered. This feature demonstrates the effects of each new test result as it is entered.

Diagnosis results buttonsThe familiar buttons: Compare, Why Not, Open case, Save case, Remove All, Print, Email are all in the Identification list area.

Usability improvements

Updated lists

The organism lists have been updated to extend the length of the screen. The organisms can be selected by clicking the check boxes to their left and then Compared. Clicking on expands the list of synonyms.

Collapsible windows

Windows in Identify, such as Suggestions and Phenotypic Tests can be minimized and hidden. For example to not see suggestions, click on the minimize button Minimize button to the left title.

Mouse overs
More mouse-overs have been added: Clickable boxes expand as you mouse over them, and display clear symbols to select “yes” or “no.”

Phenotype
You can now click on the tests  in the Phenotype window.

Quick sorting
Probability sort arrowIdentification results can be sorted alphabetically or by probability easily by clicking the column title.

Window resizing
Changing vertical window size expands size of Phenotypic tests and Identification list sub-windows in Identify and Organism list. This is a great feature for larger monitors.

Previous version
Click “Original Microbiology” to use the older interface.

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Tuberculosis in Haiti

February 7th, 2010

As pointed out by ProMED, tuberculosis rates in Haiti were already highest in the region before the current disaster. In the following graph, I’ve contrasted reports for Haiti with those of neighboring countries.

Don’t forget to check out GIDEON’s free e-book: Infectious Diseases of Haiti

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Update: February 7, 2010

February 7th, 2010

GIDEON what’s new summary: February 5 to February 7, 2010

Infectious Diseases – Outbreaks (3 updates)

  • 3 Diseases
  • Map
  • Infectious Diseases – Diseases (663 updates)

  • 129 Diseases
  • 534 Country notes
  • Map
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    Update: February 5, 2010

    February 4th, 2010

    GIDEON what’s new summary: February 3 to February 5, 2010

    Infectious Diseases – Diagnosis (3 updates)

  • 3 Countries
  • Infectious Diseases – Outbreaks (2 updates)

  • 2 Diseases
  • Map
  • Infectious Diseases – Diseases (566 updates)

  • 30 Clinical notes
  • 72 Diseases
  • 464 Country notes
  • Map
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    Update: February 3, 2010

    February 3rd, 2010

    GIDEON what’s new summary: February 1 to February 3, 2010

    Infectious Diseases – Diagnosis (37 updates)

  • 37 Countries
  • Infectious Diseases – Outbreaks (4 updates)

  • 4 Diseases
  • Map
  • Infectious Diseases – Diseases (583 updates)

  • 103 Diseases
  • 480 Country notes
  • Map
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    Update: February 1, 2010

    February 1st, 2010

    GIDEON what’s new summary: January 31 to February 1, 2010

    Infectious Diseases – Outbreaks (2 updates)

  • 2 Diseases
  • Map

  • Infectious Diseases – Diseases (971 updates)
  • 220 Diseases
  • 751 Country notes
  • Map

  • Microbiology – Bacteria (1 updates)
  • 1 Bacteria
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    Update: January 31, 2010

    January 31st, 2010

    GIDEON what’s new summary: January 28 to January 31, 2010

    Infectious Diseases – Outbreaks (4 updates)

  • 4 Diseases
  • Map

  • Infectious Diseases – Diseases (1,711 updates)
  • 1 Clinical note
  • 227 Diseases
  • 1,483 Country notes
  • Map
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    Update: January 28, 2010

    January 28th, 2010
    
    GIDEON what's new: January 26 to January 28, 2010
    
    Infectious Diseases - Diagnosis
    Country Updated < Worldwide > <Bioterrorism simulator > Afghanistan Albania Algeria American Samoa Andorra Angola Anguilla Antigua & Barbuda Argentina Armenia Aruba Australia Austria Azerbaijan Azores Bahamas Bahrain Bangladesh Barbados Belarus Belgium Belize Benin Bermuda Bhutan Bolivia Bosnia and Herzegovina Botswana Brazil British Virgin Islands Brunei Bulgaria Burkina Faso Burundi Cambodia Cameroon Canada Canary Islands Cape Verde Cayman Islands Central African Republic Chad Chile China Christmas Island Colombia Comoros Congo Cook Islands Costa Rica Croatia Cuba Cyprus Czech Republic Democratic Rep. of Congo Denmark Djibouti Dominica Dominican Republic East Timor Ecuador Egypt El Salvador Equatorial Guinea Eritrea Estonia Ethiopia Falkland Islands Fiji Finland France French Guiana French Polynesia Gabon Gambia Georgia Germany Ghana Gibraltar Greece Greenland Grenada Guadeloupe Guam Guatemala Guinea Guinea Bissau Guyana Haiti Honduras Hong Kong Hungary Iceland India Indonesia Iran Iraq Ireland Israel Italy Ivory Coast Jamaica Japan Jordan Kazakhstan Kenya Kiribati Kuwait Kyrgyzstan Laos Latvia Lebanon Lesotho Liberia Libya Liechtenstein Lithuania Luxembourg Macao Macedonia Madagascar Malawi Malaysia Maldives Mali Malta Marshall Islands Martinique Mauritania Mauritius Mexico Micronesia Moldova Monaco Mongolia Montserrat Morocco Mozambique Myanmar (Burma) Namibia Nauru Nepal Netherlands Netherlands Antilles New Caledonia New Zealand Nicaragua Niger Nigeria Niue Norfolk Island Northern Marianas Norway Oman Pakistan Palau Panama Papua New Guinea Paraguay Peoples Dem. Rep. Korea Peru Philippines Pitcairn Island Poland Portugal Puerto Rico Qatar Republic of Korea Reunion Romania Russian Federation Rwanda Samoa San Marino Sao Tome & Principe Saudi Arabia Scotland Senegal Serbia and Montenegro Seychelles Sierra Leone Singapore Slovakia Slovenia Solomon Islands Somalia South Africa Spain Sri Lanka St. Helena St. Kitts & Nevis St. Lucia St. Vincent & Grenadines Sudan Suriname Swaziland Sweden Switzerland Syria Taiwan Tajikistan Tanzania Thailand Togo Tokelau Tonga Trinidad & Tobago Tunisia Turkey Turkmenistan Turks and Caicos Islands Tuvalu Uganda Ukraine United Arab Emirates United Kingdom United States Uruguay Uzbekistan Vanuatu Venezuela Vietnam Virgin Islands, U.S. Wake Island Wallis and Futuna Islands Western Sahara Yemen Zambia Zimbabwe
    Infectious Diseases - Diseases
    AIDS Clinical Notes, Brazil, Italy, Poland, United States
    Adenovirus infection Ghana, Japan
    Aeromonas & marine Vibrio infx. South Africa
    Amoeba - free living Guadeloupe, Turkey
    Amoebic colitis < Worldwide >, South Africa, Turkey
    Angiostrongyliasis Jamaica
    Ascariasis Brazil, Turkey
    Aspergillosis < Worldwide >, United States
    Bacillus cereus food poisoning Singapore
    Blastocystis hominis infection Turkey
    Blastomycosis < Worldwide >, Canada
    Brucellosis Cameroon, Ireland
    Campylobacteriosis Canada, South Africa, Switzerland
    Candidiasis Republic of Korea
    Chandipura and Vesicular stomatitis viruses United States
    Chikungunya Clinical Notes
    Cholera Benin, Hungary, Malaysia, United Kingdom
    Clostridium difficile colitis United Kingdom
    Coccidioidomycosis United States

    Read the rest of this entry »

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    E-book: Infectious Diseases of Haiti by GIDEON

    January 28th, 2010

    When the humanitarian disaster in Haiti began to unfold, we accelerated development of a comprehensive book on the diseases of that country. This will be one in a series of E-books which present the status of all infectious diseases .. in all individual countries. This Ebook, Infectious Diseases of Haiti, will be offered free of charge to all Health Professionals concerned with the current disaster.

    There are 347 forms of human infectious disease in the world today – and 198 of these (more than half) are known to occur in Haiti. Sadly, one of the “side effects” of living in a poor and disaster-ridden economy is a lack of useful facts regarding the local status of individual diseases. GIDEON (Global Infectious Diseases and Epidemiology Online Network) is a Web-based application which follows diseases – both on a global level and within each country. Data are updated daily and are derived from all relevant journals, websites, Health Ministry reports and publications of the World Health Organization. The electronic book (E-book) is generated from information in the GIDEON database, and will serve as the first comprehensive review of Infectious Diseases in Haiti. Similar E-books can be prepared for any other country – or disease – and will be available from GIDEON in the near future.

    To download, click on the following link:
    Infectious Diseases of Haiti by GIDEON (313 pages, 2.7MB, updated 2/7/10)

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    Non-tuberculous Mycobacterial Infections

    January 27th, 2010

    Infection by non-tuberculous mycobacteria is commonly associated with cosmetic surgery, therapeutic injections and other invasive procedures. The following is a list of notable outbreaks:

    Argentina:
    2007 to 2007 – An outbreak (28 cases) of Mycobacterium immunogenum infection in Buenos Aires was associated with mesotherapy.

    Brazil:
    2002 to 2004 – An outbreak (14 cases) of mycobacterial wound infection associated with silicone breast implant surgery was reported in Campinas, Sao Paulo.
    2003 – An outbreak (5 cases) in Sao Paulo of keratitis due to Mycobacterium immunogenum was associated with myopia surgery.
    2004 to 2005 – An outbreak (311 cases) of Mycobacterium abscessus infections in Belem was associated with invasive procedures. Mycobacterium massiliense and M. bolletii were also identified in some cases.
    2006 to 2007 – An outbreak (1,051 clinical cases) of Mycobacterium massiliense infections involving 63 hospitals in Rio de Janeiro state was related to contaminated instruments used in video-assisted surgery.
    2008 – An outbreak (13 cases) of Mycobacterium fortuitum infections in Sao Paulo was associated with breast implant surgery.
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